iva 1.0.11+ds-7
Package Information
| Description | iterative virus sequence assembler IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth. IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence. |
|---|---|
| Maintainer | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed By | Andreas Tille <tille@debian.org> |
| Sponsor | tille@debian.org |
| Distribution | unstable |
| Architecture | any all |
| VCS | git: https://salsa.debian.org/med-team/iva.git (browse) |
| Closes | #1141283 |
| Popcon Installs | 106 |
| Binary NEW | Yes (binary-only upload) |
| Blocked Bugs | #1130323 (normal) |
| Tracker | https://tracker.debian.org/pkg/iva |
| Uploaded | 3 hours ago |
New Package Report
.changes
| Version | 1.0.11+ds-7 |
|---|---|
| Changed-By | Andreas Tille |
| Architecture | source all amd64 |
| Distribution | unstable |
| Date | Wed, 08 Jul 2026 14:37:40 +0200 |
| Source | iva |
Changelog
iva (1.0.11+ds-7) unstable; urgency=medium
.
[ Sascha Steinbiss ]
* Update the salsa-ci.yml file with the current Debian Med one.
.
[ Andreas Tille ]
* d/watch: version=5
* Standards-Version: 4.7.4 (routine-update)
* Reflow Uploaders field (cme)
* Remove Priority field (cme)
* Drop 'Rules-Requires-Root: no' from d/control (routine-update)
* Set upstream metadata fields: Repository.
* Separate iva-examples package containing test data
* Install autopkgtest as user example in docs as run-unit-test
* Adapt to forkserver in Python3.14
Closes: #1141283.dsc
| Package-List | iva deb science optional arch=any iva-examples deb science optional arch=all |
|---|---|
| Section | science |
| Priority | optional |
| Component | main |
debian/copyright
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: iva Upstream-Contact: Martin Hunt <mh12@sanger.ac.uk> Source: https://github.com/sanger-pathogens/iva Files-Excluded: *.class Files: * Copyright: © 2014-2015 Genome Research Limited License: GPL-3+ Files: debian/* Copyright: © 2015-2023 Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> License: GPL-3+ Files: iva/gage/* Copyright: 2011 Adam Philippy <aphilippy@gmail.com> License: Public-domain These files have been released into the public domain by the author, Adam Philippy <aphilippy@gmail.com>, after email communication with IVA upstream. See https://sanger-pathogens.github.io/iva/. License: GPL-3+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/> . On Debian systems, the complete text of the GNU General Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".