libhandlegraph 2024-11-22-1
Package Information
| Description | handle-based abstraction for genome variation graphs libhandlegraph defines a set of interfaces for handle graphs: genome variation graphs in which all access is mediated by opaque handle objects. It is primarily used by vg as an abstraction layer over different backing graph implementations. |
|---|---|
| Maintainer | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed By | Andreas Tille <tille@debian.org> |
| Sponsor | tille@debian.org |
| Distribution | unstable |
| Architecture | any |
| VCS | git: https://salsa.debian.org/med-team/libhandlegraph.git (browse) |
| Closes | #1151631 |
| Tracker | https://tracker.debian.org/pkg/libhandlegraph |
| Uploaded | 4 hours ago |
New Package Report
.changes
| Source | libhandlegraph |
|---|---|
| Version | 2024-11-22-1 |
| Changed-By | Andreas Tille <tille@debian.org> |
| Architecture | source amd64 |
| Distribution | unstable |
| Date | Thu, 22 Oct 2026 13:43:48 +0200 |
Changelog
libhandlegraph (2024-11-22-1) unstable; urgency=medium . * Initial release (Closes: #1151631).
.dsc
| Section | libdevel |
|---|---|
| Priority | optional |
| Component | main |
| Package-List | libhandlegraph-dev deb libdevel optional arch=any libhandlegraph1 deb libs optional arch=any |
debian/copyright
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: libhandlegraph Source: https://github.com/vgteam/libhandlegraph Files: * Copyright: 2014 Erik Garrison License: MIT Files: debian/* Copyright: 2026 Andreas Tille <tille@debian.org> License: MIT License: MIT Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
DFSG Assistant LLM REVIEW 0 blocker, 1 important, 0 minor
This is an LLM based review using a Debian Inference based workflow. It was not written by a member of the DFSG team and has not been checked by one. It is not a decision on the package: it may be wrong, and it may have missed things.
Reviewed 2 hours ago.
Report
DFSG NEW review for libhandlegraph version 2024-11-22-1
Summary
- Licensing is DFSG-compliant and
debian/copyrightis accurate: Yes - Packaging is of good quality: Yes
- Issues: 0 blocker, 1 important, 0 minor
- debian/watch: version 5, refused by the checks made before uscan is run
- debian/copyright: machine-readable
- Scan before the review: nothing found
Licensing
The entire tree is MIT-licensed: upstream LICENSE (Copyright (c) 2014 Erik Garrison) covers the project, and no source file carries its own copyright/licence header, so the whole tree falls under the single project-wide MIT licence. debian/copyright is in DEP-5 (Format 1.0) and accurately covers it: Files: * / MIT / 2014 Erik Garrison, Files: debian/* / MIT / 2026 Andreas Tille, with the full MIT text included (MIT is not in /usr/share/common-licenses). The prescan's author check scanned all 77 files and found every copyright holder already named in debian/copyright. No non-free terms, no built or unmodifiable files, no vendored third-party code, so the licensing is DFSG-compliant.
Packaging
Clean, conventional debhelper compat-14 packaging: dh $@ --buildsystem=cmake with DEB_BUILD_MAINT_OPTIONS=hardening=+all; debian/patches adds a proper SONAME (VERSION 1.0.0, SOVERSION 1) and moves CMake config files into the multiarch CMAKE_INSTALL_LIBDIR, without which the shared library could not be packaged as libhandlegraph1; libhandlegraph1 (shared lib) / libhandlegraph-dev (headers, static lib, .so symlink, CMake files) split matches the .install globs; both Multi-Arch: same with an in-line libhandlegraph1 (= ${binary:Version}) dev dependency, following established practice; autopkgtest smoke test exercising find_package + link + ldd is coherent; changelog version, source version and install files all agree; Standards-Version 4.7.4 against current Policy 4.7.4.1 is fine. No policy violations or sponsor-blocking problems found.
Issues
1. [important] [packaging] debian/watch was refused by the checks made before uscan is run
- Files:
debian/watch - Basis: found by the review tooling's own checks
- Evidence: - it contains a "transport::address" style git URL
- Problem: These checks refuse what is not plausibly a watch file, and the values known to make uscan do something other than look at an upstream site. uscan was not run, so the file is untested.
- Fix: Read
debian/watchand correct it. If uscan is run on it by hand, do that with caution.
Verified
- debian/copyright is machine-readable (Format:
https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/):Files: */Copyright: 2014 Erik Garrison/License: MIT;Files: debian/*/Copyright: 2026 Andreas Tille <tille@debian.org>/License: MIT; standaloneLicense: MITparagraph reproduces the full MIT text. - upstream
LICENSE:The MIT License (MIT),Copyright (c) 2014 Erik Garrison, matching theFiles: *stanza holder and year. - Prescan account: its only finding is the author check, which scanned all 77 files and reports
every holder found is named in debian/copyright; nothing else in prescan.md. - Full-tree licence grep (Copyright, (c), (C), ©, SPDX, Licensed under, GPL, Apache, MPL, public domain, All rights reserved) found licence text only in
LICENSEanddebian/copyright; no .cpp/.hpp carries a per-file header, so every file is governed by the project MIT licence and matched byFiles: *. - Tree (77 files) holds only C++14 sources, headers, CMake files, README, .gitignore and LICENSE; no minified/js/jar/class/so/pdf data, no fonts/images, no embedded third-party code; nothing to exclude via Files-Excluded.
debian/rules(compat 14):dh $@ --buildsystem=cmake,override_dh_auto_configurepasses-DCMAKE_INSTALL_LIBDIR=lib/$(DEB_HOST_MULTIARCH),hardening=+allexported; consistent with theCMAKE_INSTALL_LIBDIR-relativeConfigPackageLocationintroduced by the patch.- Patch
debian/patches/soname-and-cmake-path.patchis needed and correct: without the SONAME there is no versioned shared library to package, and without the CMake-dir change the config files would land in non-multiarchlib/cmake. DEP-3 headers present (Description, Author, Last-Update). - Binary split consistent:
libhandlegraph1.install(usr/lib/*/libhandlegraph.so.*) vslibhandlegraph-dev.install(usr/include/handlegraph,usr/lib/*/libhandlegraph.a,usr/lib/*/libhandlegraph.so,usr/lib/*/cmake/libhandlegraph); every cmake-installed artifact is claimed by a glob. libhandlegraph-devDepends: libhandlegraph1 (= ${binary:Version})on a Multi-Arch: same runtime lib without an:anyqualifier matches established archive practice (e.g. libjson-c-dev, Multi-Arch: same, depends unqualified onlibjson-c5 (= ...)); semantically right because the dev package's static library is architecture-specific.- autopkgtest
debian/tests/control(Tests: smoke,Depends: @, build-essential, cmake) anddebian/tests/smokeare coherent: smoke builds withfind_package(libhandlegraph REQUIRED)(found via the multiarch cmake dir), linkslibhandlegraph::handlegraph_shared, uses header-onlyas_integer(net_handle_t&)(inline insrc/include/handlegraph/util.hpp) andoperator==fromtypes.cpp, then checkslddforlibhandlegraph.so. debian/changelog:libhandlegraph (2024-11-22-1) unstable, valid version (upstream 2024-11-22, revision 1), matchesdebian/watch's mangle target and the orig tarball name;Standards-Version: 4.7.4is current (Policy 4.7.4.1 by the policy tool).- Marriage of package name and SONAME: upstream version 1.0.0, SOVERSION 1 and binary package
libhandlegraph1agree. - Build-Depends
debhelper-compat (= 14), cmakeresolve in the archive; only arch:any packages, so Build-Depends (not -Indep) is right;${shlibs:Depends}on libhandlegraph1 is correct (harmlessly redundant at compat 14, which applies substvars itself).
Not confirmed
- Actual install layout (exact
.sosymlink chain and generatedlibhandlegraphTargets.cmake) and an actual build/autopkgtest run were not verified here (read-only review, no build allowed); no cause to suspect a failure was found in the packaging, so nothing is reported on that basis.
Proposed changes
None.
Uploader's response to the LLM review
The uploader was emailed about the review 2 hours ago.