libkff 0.0~git20250321.cf4d866-1
Package Information
| Description | C++ library to read and write kff k-mer files The Kmer File Format (kff) is a binary container for sets of kmers and their associated data, organised in typed sections: global values, raw or minimizer sequences, indexes and a footer. This library provides a low level API to read and write every kff section type and a high level API that enumerates kmers hiding the section structure. This package contains the shared library. |
|---|---|
| Maintainer | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| Changed By | Andreas Tille <tille@debian.org> |
| Sponsor | tille@debian.org |
| Distribution | unstable |
| Architecture | any |
| VCS | git: https://salsa.debian.org/med-team/libkff.git (browse) |
| Closes | #1152023 |
| Tracker | https://tracker.debian.org/pkg/libkff |
| Uploaded | 2 hours ago |
New Package Report
.changes
| Date | Sun, 25 Oct 2026 16:54:00 +0100 |
|---|---|
| Source | libkff |
| Version | 0.0~git20250321.cf4d866-1 |
| Changed-By | Andreas Tille <tille@debian.org> |
| Architecture | source amd64 |
| Distribution | unstable |
Changelog
libkff (0.0~git20250321.cf4d866-1) unstable; urgency=medium . * Initial release (Closes: #1152023)
.dsc
| Component | main |
|---|---|
| Package-List | libkff-dev deb libdevel optional arch=any libkff1 deb libs optional arch=any |
| Section | libdevel |
| Priority | optional |
debian/copyright
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: kff-cpp-api
Upstream-Contact: Yoann Dufresne <yoann.dufresne0@gmail.com>
Source: https://github.com/Kmer-File-Format/kff-cpp-api
Files: *
Copyright: 2020-2025 Yoann Dufresne <yoann.dufresne0@gmail.com>
2020 Pierre Marijon <pierre.marijon@hhu.de>
2021 Rayan Chikhi <rchikhi@users.noreply.github.com>
2021 Teo Lemane <teo.lemane@gmail.com>
2021 Marek Kokot <marek.koki@gmail.com>
2023 Jouni Siren <jouni.siren@iki.fi>
2024 Pierre Peterlongo <pierre.peterlongo@inria.fr>
2024 Glenn Hickey <glenn.hickey@gmail.com>
2025 Antoine Limasset <antoine.limasset@gmail.com>
License: AGPL-3.0+
Files: debian/*
Copyright: 2026 Andreas Tille <tille@debian.org>
License: AGPL-3.0+
License: AGPL-3.0+
This program is free software: you can redistribute it and/or modify it
under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public
License for more details.
.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <https://www.gnu.org/licenses/>.
.
On Debian systems, the complete text of the GNU Affero General Public
License version 3 can be found in "/usr/share/common-licenses/AGPL-3".
DFSG Assistant LLM REVIEW 0 blocker, 2 important, 0 minor
This is an LLM based review using a Debian Inference based workflow. It was not written by a member of the DFSG team and has not been checked by one. It is not a decision on the package: it may be wrong, and it may have missed things.
Reviewed 1 hour ago.
Report
DFSG NEW review for libkff version 0.0~git20250321.cf4d866-1
Summary
- Licensing is DFSG-compliant and
debian/copyrightis accurate: No - Packaging is of good quality: Yes
- Issues: 0 blocker, 2 important, 0 minor
- debian/watch: version 5
- debian/copyright: machine-readable
- Scan before the review: nothing found
Licensing
The code is DFSG-compliant: the upstream LICENSE is the verbatim GNU Affero GPL version 3 text, a free licence, and every source file is covered by the Files: * stanza. However debian/copyright inaccurately declares the licence as AGPL-3.0+ (with 'or any later version'), whereas the LICENSE file grants version 3 only with no author-added 'or later' clause. No source file carries a per-file copyright header; the named holders come from upstream history, and the pre-review author check found no holder missing.
Packaging
Clean modern packaging: dh with the cmake buildsystem at compat 14, a correct binary split (libkff1 / libkff-dev) with Multi-Arch: same and Architecture: any, a DEP-3-headed patch adding install rules and a versioned soname, a meaningful autopkgtest that compiles against the installed header/lib and round-trips a file, and explicit LDFLAGS handling in rules to keep linker hardening (cmake.pm does not pass LDFLAGS). Standards-Version 4.7.4 is current; no maintainer scripts are needed for a library.
Issues
1. [important] [licensing] debian/copyright declares AGPL-3.0+ but upstream is AGPL-3.0 (version 3 only, no 'or any later version')
- Files:
debian/copyright:16,debian/copyright:22-26,LICENSE:1 - Basis: checked, in the package or with a reference tool
- Evidence: debian/copyright:
License: AGPL-3.0+and the standalone paragraph 'either version 3 of the License, or (at your option) any later version'; upstreamLICENSEbegins 'GNU AFFERO GENERAL PUBLIC LICENSE Version 3, 19 November 2007' and contains no author-added 'or later' grant. - Problem: The upstream LICENSE is the verbatim AGPL-3.0 text. The 'or (at your option) any later version' wording in the licence's 'How to Apply These Terms' appendix is a template for licensing new programs, not a grant covering this project. So the code is licensed under AGPL-3.0 only, and the
+suffix (and the corresponding wording) overstates the rights granted to recipients. The short name must match the actual text and version (copyright-format 6.7 / 7.1). - Fix: Change
License: AGPL-3.0+toLicense: AGPL-3.0in both theFiles: *anddebian/*stanzas and the standalone paragraph, and drop 'or (at your option) any later version' so the text reads 'either version 3 of the License'.
2. [important] [licensing] debian/copyright points to a licence text that /usr/share/common-licenses does not have
- Files:
debian/copyright:37 - Basis: found by the review tooling's own checks
- Evidence: Named but not in /usr/share/common-licenses on the reviewing system:
AGPL-3(there isAGPL-3.0). - Problem: Policy 12.5 requires the licence to be in the copyright file or, for the licences base-files ships, a reference to the file under /usr/share/common-licenses. A reference to a file that is not there leaves the installed copyright file without the licence text.
- Fix: Name the file as base-files names it, or include the licence text in the License paragraph.
Verified
- Read all 10 upstream files (excluding .pc/ and debian/): CMakeLists.txt, kff_io.cpp, kff_io.hpp.in, main.cpp, LICENSE, README.md, .gitignore, and benchmarks/{CMakeLists.txt, reader.cpp, perfs.tsv}.
- LICENSE is the verbatim GNU Affero GPL version 3 text (661 lines); no source file carries a per-file copyright or licence header.
- The pre-review dfsg-author-check reported 'every holder found is named in debian/copyright', so it listed no files needing account.
- kff_io.hpp is generated from kff_io.hpp.in via configure_file(), so the preferred form for modification is present; benchmarks/perfs.tsv is two rows of benchmark result data covered by
Files: *. - Read /usr/share/perl5/Debian/Debhelper/Buildsystem/cmake.pm: its configure() does not pass LDFLAGS to cmake, so debian/rules' explicit
-DCMAKE_SHARED_LINKER_FLAGS="$(LDFLAGS)"is a legitimate hardening measure, not redundant. - Read every file under debian/ including the patch, tests and install files.
- uscan found the packaged version as the newest upstream release (upstream
0.0~git20250321.cf4d866, packaged0.0~git20250321.cf4d866).
Not confirmed
- The nine individual copyright holders and their years are not stated in any in-tree file (no file headers), so they are presumed drawn from upstream git history and could not be independently verified from the source; the pre-review author check found no discrepancy.
Proposed changes
None.
Uploader's response to the LLM review
Waiting for the uploader's response until , because the review found serious issues.