Review: mdanse 2.0.0~b1-2
Review Information
| Package | mdanse — 2.0.0~b1-2 |
|---|---|
| Reviewer | awm |
| Allocated | 1 day ago |
| Started | 1 day ago |
| Status | rejected |
| Completed | 1 day ago |
Final Comment
The following files /folders should be excluded from the tarball:
- Tests/UnitTests/Data/.DS_Store
- Tests/UnitTests/Data/pycache/data.cpython-311.pyc
- Tests/UnitTests/Data/pycache/init.cpython-311.pyc
There are also some files that are licensed LGPL-2.1+ which you missed (see "licenserecon" lrc -l output in notes)
and others you have as GPL-3 which are perhaps GPL-3+?
I'm also a little concerned at the 'vulture' report, but I suppose that is mostly an upstream issue. Anyway, please
read through all of the notes against this review at https://dfsg-new-queue.debian.org/reviews/mdanse
Policy should also be updated from 4.5 to the latest version.
New Package Report
Notes
1 day ago
● public
suspicious-source
Command: suspicious-source
Exit code: 0
./Doc/.DS_Store
./Doc/figures/msd_water.eps
./Src/MDANSE/Chemistry/residues_alt_names.json
./Src/MDANSE/Chemistry/residues.json
./Src/MDANSE/Chemistry/atoms.json
./Src/MDANSE/Chemistry/nucleotides.json
./Src/MDANSE/Chemistry/molecules.json
./Src/MDANSE/Framework/units.json
./Src/MDANSE.egg-info/dependency_links.txt
./Tests/UnitTests/Data/trajectory_no_unit_cell.mdt
./Tests/UnitTests/Data/mock.json
./Tests/UnitTests/Data/mdmc_h5md.h5
./Tests/UnitTests/Data/hem-cam.dcd
./Tests/UnitTests/Data/md.xtc
./Tests/UnitTests/Data/co2gas_md3.mdt
./Tests/UnitTests/Data/Cu_5steps_ASEformat.traj
./Tests/UnitTests/Data/named_molecules.mdt
./Tests/UnitTests/Data/sushi.his
./Tests/UnitTests/Data/Ar_mdmc_h5md.h5
./Tests/UnitTests/Data/apoferritin.dcd
./Tests/UnitTests/Data/short_trajectory_after_changes.mdt
./Tests/UnitTests/Data/lammps_moly_h5md.h5
./Tests/UnitTests/Data/H2O.trj
./Tests/UnitTests/Data/.DS_Store
./Tests/UnitTests/Data/__pycache__/data.cpython-311.pyc
./Tests/UnitTests/Data/__pycache__/__init__.cpython-311.pyc
1 day ago
● public
vulture
Command: vulture .
Exit code: 3
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/McStasOptionsConfigurator.py:27: SyntaxWarning: invalid escape sequence '\{'
big_line = input.strip("\{\}[] \n")
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/ConfigFileConfigurator.py:105: SyntaxWarning: invalid escape sequence '\s'
m = re.match("^\s*(\d+)\s*atoms\s*$", line, re.I)
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/ConfigFileConfigurator.py:110: SyntaxWarning: invalid escape sequence '\s'
m = re.match("^\s*(\d+)\s*atom types\s*$", line, re.I)
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/ConfigFileConfigurator.py:115: SyntaxWarning: invalid escape sequence '\s'
m = re.match("^\s*(\d+)\s*bonds\s*$", line, re.I)
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/ConfigFileConfigurator.py:119: SyntaxWarning: invalid escape sequence '\s'
if re.match("^\s*masses\s*$", line, re.I):
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/ConfigFileConfigurator.py:134: SyntaxWarning: invalid escape sequence '\s'
m = re.match("^\s*bonds\s*$", line, re.I)
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/ConfigFileConfigurator.py:143: SyntaxWarning: invalid escape sequence '\s'
if re.match("^\s*Atoms\s*$", line.split("#")[0]):
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/McStasParametersConfigurator.py:88: SyntaxWarning: invalid escape sequence '\s'
"\s*(\w+)\s*\((\w+)\)\s*\[default='(\S+)'\]", parameters_string
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/InstrumentResolutionConfigurator.py:38: SyntaxWarning: invalid escape sequence '\o'
.. math:: TF(f(t) * r(t)) = F(\omega) \otimes R(\omega) = G(\omega)
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/FieldFileConfigurator.py:53: SyntaxWarning: invalid escape sequence '\s'
"(molecules|molecular types)\s+(\d+)", lines.pop(0), re.IGNORECASE
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/FieldFileConfigurator.py:74: SyntaxWarning: invalid escape sequence '\s'
"nummols\s+(\d+)", lines[first + 1], re.IGNORECASE
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Configurators/FieldFileConfigurator.py:79: SyntaxWarning: invalid escape sequence '\s'
match = re.match("atoms\s+(\d+)", lines[i], re.IGNORECASE)
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Jobs/OrderParameter.py:47: SyntaxWarning: invalid escape sequence '\p'
.. math:: \phi(T = T_{1}-T_{0}) = arcos( \\overrightarrow{vector(T_{1})} . \\overrightarrow{vector(T_{0})} )
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Jobs/AngularCorrelation.py:38: SyntaxWarning: invalid escape sequence '\p'
.. math:: \phi(T = T_{1}-T_{0}) = arcos( \\overrightarrow{vector(T_{1})} . \\overrightarrow{vector(T_{0})} )
/usr/src/dfsg/mdanse_2.0.0~b1-2/Src/MDANSE/Framework/Jobs/VelocityAutoCorrelationFunction.py:48: SyntaxWarning: invalid escape sequence '\i'
.. math:: D = \\frac{1}{3}\int_{0}^{+\infty}{<v(0) \cdot v(t)>dt}
Doc/conf_api.py:36: unused variable 'needs_sphinx' (60% confidence)
Doc/conf_api.py:49: unused variable 'templates_path' (60% confidence)
Doc/conf_api.py:52: unused variable 'source_suffix' (60% confidence)
Doc/conf_api.py:55: unused variable 'source_encoding' (60% confidence)
Doc/conf_api.py:58: unused variable 'master_doc' (60% confidence)
Doc/conf_api.py:61: unused variable 'project' (60% confidence)
Doc/conf_api.py:62: unused variable 'copyright' (60% confidence)
Doc/conf_api.py:71: unused variable 'release' (60% confidence)
Doc/conf_api.py:75: unused variable 'inheritance_graph_attrs' (60% confidence)
Doc/conf_api.py:77: unused variable 'inheritance_graph_attrs' (60% confidence)
Doc/conf_api.py:79: unused variable 'inheritance_node_attrs' (60% confidence)
Doc/conf_api.py:85: unused variable 'pygments_style' (60% confidence)
Doc/conf_api.py:89: unused variable 'html_sidebars' (60% confidence)
Doc/conf_api.py:93: unused variable 'html_theme' (60% confidence)
Doc/conf_api.py:94: unused variable 'html_theme_options' (60% confidence)
Doc/conf_api.py:97: unused variable 'htmlhelp_basename' (60% confidence)
Doc/conf_api.py:101: unused variable 'latex_documents' (60% confidence)
Doc/conf_api.py:111: unused variable 'pdf_documents' (60% confidence)
Doc/conf_api.py:119: unused variable 'man_pages' (60% confidence)
Doc/conf_api.py:126: unused variable 'texinfo_documents' (60% confidence)
Doc/conf_api.py:139: unused variable 'exclude_patterns' (60% confidence)
Doc/conf_help.py:34: unused variable 'needs_sphinx' (60% confidence)
Doc/conf_help.py:45: unused variable 'templates_path' (60% confidence)
Doc/conf_help.py:48: unused variable 'source_suffix' (60% confidence)
Doc/conf_help.py:51: unused variable 'source_encoding' (60% confidence)
Doc/conf_help.py:54: unused variable 'master_doc' (60% confidence)
Doc/conf_help.py:57: unused variable 'project' (60% confidence)
Doc/conf_help.py:58: unused variable 'copyright' (60% confidence)
Doc/conf_help.py:67: unused variable 'release' (60% confidence)
Doc/conf_help.py:71: unused variable 'inheritance_graph_attrs' (60% confidence)
Doc/conf_help.py:73: unused variable 'inheritance_graph_attrs' (60% confidence)
Doc/conf_help.py:75: unused variable 'inheritance_node_attrs' (60% confidence)
Doc/conf_help.py:78: unused variable 'pygments_style' (60% confidence)
Doc/conf_help.py:84: unused variable 'html_theme' (60% confidence)
Doc/conf_help.py:85: unused variable 'html_theme_options' (60% confidence)
Doc/conf_help.py:87: unused variable 'html_show_copyright' (60% confidence)
Doc/conf_help.py:90: unused variable 'htmlhelp_basename' (60% confidence)
Doc/conf_help.py:94: unused variable 'latex_documents' (60% confidence)
Doc/conf_help.py:104: unused variable 'pdf_documents' (60% confidence)
Doc/conf_help.py:110: unused variable 'exclude_patterns' (60% confidence)
setup.py:36: unused variable 'EXTENSIONS_PATH' (60% confidence)
setup.py:45: unused function 'is_package' (60% confidence)
setup.py:49: unused function 'find_package_data' (60% confidence)
setup.py:107: unused function 'find_data' (60% confidence)
setup.py:211: unused attribute 'config_dir' (60% confidence)
setup.py:222: unused attribute 'builder_target_dir' (60% confidence)
setup.py:303: unused attribute 'cython_directives' (60% confidence)
Src/MDANSE/Chemistry/ChemicalEntity.py:52: unused class 'InvalidMoleculeError' (60% confidence)
Src/MDANSE/Chemistry/Structrures.py:46: unused attribute 'molecule_object' (60% confidence)
Src/MDANSE/Chemistry/Structrures.py:78: unused attribute 'molecule_object' (60% confidence)
Src/MDANSE/Core/Platform.py:70: unused method 'doc_path' (60% confidence)
Src/MDANSE/Core/Platform.py:80: unused method 'jobs_launch_delay' (60% confidence)
Src/MDANSE/Core/Platform.py:90: unused method 'api_path' (60% confidence)
Src/MDANSE/Core/Platform.py:100: unused method 'help_path' (60% confidence)
Src/MDANSE/Core/Platform.py:110: unused method 'full_dotted_module' (60% confidence)
Src/MDANSE/Core/Platform.py:140: unused method 'change_directory' (60% confidence)
Src/MDANSE/Core/Platform.py:150: unused method 'is_directory_writable' (60% confidence)
Src/MDANSE/Core/Platform.py:202: unused method 'database_default_path' (60% confidence)
Src/MDANSE/Core/Platform.py:212: unused method 'database_user_path' (60% confidence)
Src/MDANSE/Core/Platform.py:222: unused method 'get_processes_info' (60% confidence)
Src/MDANSE/Core/Platform.py:232: unused method 'kill_process' (60% confidence)
Src/MDANSE/Core/Platform.py:252: unused method 'example_data_directory' (60% confidence)
Src/MDANSE/Core/Platform.py:294: unused method 'logfiles_directory' (60% confidence)
Src/MDANSE/Core/Platform.py:332: unused method 'home_directory' (60% confidence)
Src/MDANSE/Core/Platform.py:348: unused method 'home_directory' (60% confidence)
Src/MDANSE/Core/Platform.py:358: unused method 'kill_process' (60% confidence)
Src/MDANSE/Core/Platform.py:409: unused method 'get_processes_info' (60% confidence)
Src/MDANSE/Core/Platform.py:490: unused variable 'rc' (60% confidence)
Src/MDANSE/Core/Platform.py:503: unused method 'get_processes_info' (60% confidence)
Src/MDANSE/Core/Platform.py:562: unused method 'home_directory' (60% confidence)
Src/MDANSE/Core/Platform.py:572: unused method 'kill_process' (60% confidence)
Src/MDANSE/Core/SubclassFactory.py:196: unused function 'indirect_subclass_dictionary' (60% confidence)
Src/MDANSE/Framework/AtomSelector/selector.py:184: unused method 'update_with_idxs' (60% confidence)
Src/MDANSE/Framework/Configurable.py:44: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Configurators/ASEFileConfigurator.py:23: unused class 'ASEFileConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/AseInputFileConfigurator.py:25: unused class 'AseInputFileConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/AtomMappingConfigurator.py:22: unused class 'AtomMappingConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/AtomSelectionConfigurator.py:22: unused class 'AtomSelectionConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/AtomSelectionConfigurator.py:139: unused method 'get_selector' (60% confidence)
Src/MDANSE/Framework/Configurators/AtomsListConfigurator.py:23: unused class 'AtomsListConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/AtomTransmutationConfigurator.py:79: unused method 'get_json_setting' (60% confidence)
Src/MDANSE/Framework/Configurators/AtomTransmutationConfigurator.py:93: unused class 'AtomTransmutationConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/AtomTransmutationConfigurator.py:208: unused method 'get_transmuter' (60% confidence)
Src/MDANSE/Framework/Configurators/AxisSelectionConfigurator.py:23: unused class 'AxisSelectionConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/BasisSelectionConfigurator.py:23: unused class 'BasisSelectionConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/BooleanConfigurator.py:19: unused class 'BooleanConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/ConfigFileConfigurator.py:54: unused class 'ConfigFileConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/CorrelationFramesConfigurator.py:21: unused class 'CorrelationFramesConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/DerivativeOrderConfigurator.py:21: unused class 'DerivativeOrderConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/DistHistCutoffConfigurator.py:8: unused class 'DistHistCutoffConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/FieldFileConfigurator.py:34: unused class 'FieldFileConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/FloatConfigurator.py:21: unused class 'FloatConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/GroupingLevelConfigurator.py:60: unused class 'GroupingLevelConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/HDFInputFileConfigurator.py:22: unused class 'HDFInputFileConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/IConfigurator.py:25: unused class 'ConfiguratorError' (60% confidence)
Src/MDANSE/Framework/Configurators/IConfigurator.py:154: unused property 'dependencies' (60% confidence)
Src/MDANSE/Framework/Configurators/IConfigurator.py:240: unused property 'widget' (60% confidence)
Src/MDANSE/Framework/Configurators/IConfigurator.py:274: unused method 'set_configurable' (60% confidence)
Src/MDANSE/Framework/Configurators/InputDirectoryConfigurator.py:23: unused class 'InputDirectoryConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/InstrumentResolutionConfigurator.py:26: unused class 'InstrumentResolutionConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/IntegerConfigurator.py:18: unused import 'ConfiguratorError' (90% confidence)
Src/MDANSE/Framework/Configurators/InterpolationOrderConfigurator.py:19: unused class 'InterpolationOrderConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/McStasInstrumentConfigurator.py:21: unused class 'McStasInstrumentConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/McStasOptionsConfigurator.py:46: unused class 'McStasOptionsConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/McStasParametersConfigurator.py:24: unused class 'McStasParametersConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/MDFileConfigurator.py:36: unused class 'MDFileConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/MDMCTrajectoryConfigurator.py:19: unused class 'MDMCTrajectoryConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/MockTrajectoryConfigurator.py:20: unused class 'MockTrajectoryConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/MoleculeSelectionConfigurator.py:19: unused class 'MoleculeSelectionConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/MultipleChoicesConfigurator.py:21: unused class 'MultipleChoicesConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/OutputDirectoryConfigurator.py:23: unused class 'OutputDirectoryConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/OutputStructureConfigurator.py:25: unused class 'OutputStructureConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/OutputTrajectoryConfigurator.py:27: unused class 'OutputTrajectoryConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/PartialChargeConfigurator.py:48: unused method 'update_charges' (60% confidence)
Src/MDANSE/Framework/Configurators/PartialChargeConfigurator.py:66: unused method 'get_full_setting' (60% confidence)
Src/MDANSE/Framework/Configurators/PartialChargeConfigurator.py:96: unused method 'get_json_setting' (60% confidence)
Src/MDANSE/Framework/Configurators/PartialChargeConfigurator.py:110: unused class 'PartialChargeConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/PartialChargeConfigurator.py:176: unused method 'get_charge_mapper' (60% confidence)
Src/MDANSE/Framework/Configurators/ProjectionConfigurator.py:24: unused class 'ProjectionConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/PythonObjectConfigurator.py:23: unused class 'PythonObjectConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/PythonScriptConfigurator.py:19: unused class 'PythonScriptConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/QVectorsConfigurator.py:22: unused class 'QVectorsConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/RangeConfigurator.py:20: unused import 'ConfiguratorError' (90% confidence)
Src/MDANSE/Framework/Configurators/RunningModeConfigurator.py:21: unused class 'RunningModeConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/SingleChoiceConfigurator.py:18: unused import 'ConfiguratorError' (90% confidence)
Src/MDANSE/Framework/Configurators/StringConfigurator.py:23: unused class 'StringConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/TrajectoryVariableConfigurator.py:21: unused class 'TrajectoryVariableConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/UnitCellConfigurator.py:24: unused class 'UnitCellConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/UnitCellConfigurator.py:78: unused attribute '_recommended_cell' (60% confidence)
Src/MDANSE/Framework/Configurators/UnitCellConfigurator.py:85: unused attribute '_recommended_cell' (60% confidence)
Src/MDANSE/Framework/Configurators/VectorConfigurator.py:24: unused class 'VectorConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/WeightsConfigurator.py:24: unused class 'WeightsConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/XDATCARFileConfigurator.py:28: unused class 'XDATCARFileConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/XTDFileConfigurator.py:35: unused class 'XTDFileConfigurator' (60% confidence)
Src/MDANSE/Framework/Configurators/XYZFileConfigurator.py:64: unused attribute '_coordinatesSize' (60% confidence)
Src/MDANSE/Framework/Converters/ASE.py:20: unused import 'ASEAtoms' (90% confidence)
Src/MDANSE/Framework/Converters/ASE.py:41: unused class 'ASETrajectoryFileError' (60% confidence)
Src/MDANSE/Framework/Converters/CHARMM.py:21: unused class 'CHARMM' (60% confidence)
Src/MDANSE/Framework/Converters/Converter.py:27: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Converters/Converter.py:29: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Converters/DCD.py:34: unused variable 'RECSCALE32BIT' (60% confidence)
Src/MDANSE/Framework/Converters/DCD.py:35: unused variable 'RECSCALE64BIT' (60% confidence)
Src/MDANSE/Framework/Converters/DCD.py:46: unused class 'InputOutputError' (60% confidence)
Src/MDANSE/Framework/Converters/DCD.py:253: unused method 'skip_step' (60% confidence)
Src/MDANSE/Framework/Converters/DCD.py:266: unused method 'next_step' (60% confidence)
Src/MDANSE/Framework/Converters/DFTB.py:21: unused class 'DFTB' (60% confidence)
Src/MDANSE/Framework/Converters/Discover.py:250: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Converters/DL_POLY.py:74: unused class 'DL_POLYConverterError' (60% confidence)
Src/MDANSE/Framework/Converters/DMol.py:21: unused class 'DMol' (60% confidence)
Src/MDANSE/Framework/Converters/Forcite.py:276: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Converters/Gromacs.py:149: unused variable 'steps' (60% confidence)
Src/MDANSE/Framework/Converters/Gromacs.py:151: unused variable 'steps' (60% confidence)
Src/MDANSE/Framework/Converters/ImprovedASE.py:37: unused class 'ASETrajectoryFileError' (60% confidence)
Src/MDANSE/Framework/Converters/ImprovedASE.py:48: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:62: unused attribute '_energy_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:65: unused attribute '_velocity_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:66: unused attribute '_mass_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:69: unused attribute '_energy_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:72: unused attribute '_velocity_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:73: unused attribute '_mass_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:76: unused attribute '_energy_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:79: unused attribute '_velocity_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:80: unused attribute '_mass_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:83: unused attribute '_energy_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:86: unused attribute '_velocity_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:87: unused attribute '_mass_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:90: unused attribute '_energy_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:93: unused attribute '_velocity_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:94: unused attribute '_mass_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:97: unused attribute '_energy_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:100: unused attribute '_velocity_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:101: unused attribute '_mass_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:104: unused attribute '_energy_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:107: unused attribute '_velocity_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:108: unused attribute '_mass_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:111: unused attribute '_energy_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:114: unused attribute '_velocity_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:115: unused attribute '_mass_unit' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:171: unused attribute '_element' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:173: unused attribute '_element' (60% confidence)
Src/MDANSE/Framework/Converters/LAMMPS.py:576: unused attribute '_charges_variable' (60% confidence)
Src/MDANSE/Framework/Converters/NAMD.py:19: unused class 'NAMD' (60% confidence)
Src/MDANSE/Framework/Converters/VASP.py:28: unused class 'VASPConverterError' (60% confidence)
Src/MDANSE/Framework/Converters/XPLOR.py:21: unused class 'XPLOR' (60% confidence)
Src/MDANSE/Framework/Formats/MDAFormat.py:26: unused class 'MDAFormat' (60% confidence)
Src/MDANSE/Framework/Formats/MDTFormat.py:27: unused class 'MDTFormat' (60% confidence)
Src/MDANSE/Framework/Formats/SVGFormat.py:35: unused class 'SVGFormat' (60% confidence)
Src/MDANSE/Framework/Formats/TextFormat.py:39: unused class 'TextFormat' (60% confidence)
Src/MDANSE/Framework/Formats/TextFormat.py:78: unused attribute 'mtime' (60% confidence)
Src/MDANSE/Framework/Formats/TextFormat.py:93: unused attribute 'mtime' (60% confidence)
Src/MDANSE/Framework/Formats/TextFormat.py:106: unused attribute 'mtime' (60% confidence)
Src/MDANSE/Framework/Handlers/ColorizingStreamHandler.py:25: unused class 'ColorizingStreamHandler' (60% confidence)
Src/MDANSE/Framework/Handlers/LogfileHandler.py:23: unused class 'LogfileHandler' (60% confidence)
Src/MDANSE/Framework/InputData/EmptyData.py:21: unused class 'EmptyData' (60% confidence)
Src/MDANSE/Framework/InputData/HDFTrajectoryInputData.py:133: unused property 'hdf' (60% confidence)
Src/MDANSE/Framework/InputData/MockTrajectoryInputData.py:22: unused class 'MockTrajectoryInputData' (60% confidence)
Src/MDANSE/Framework/InputData/MockTrajectoryInputData.py:72: unused property 'hdf' (60% confidence)
Src/MDANSE/Framework/InputData/MVITraceInputData.py:21: unused class 'MVITraceInputData' (60% confidence)
Src/MDANSE/Framework/InputData/PeriodicTableInputData.py:21: unused class 'PeriodicTableInputData' (60% confidence)
Src/MDANSE/Framework/InstrumentResolutions/Gaussian.py:27: unused class 'Gaussian' (60% confidence)
Src/MDANSE/Framework/InstrumentResolutions/Ideal.py:27: unused class 'Ideal' (60% confidence)
Src/MDANSE/Framework/InstrumentResolutions/Lorentzian.py:23: unused class 'Lorentzian' (60% confidence)
Src/MDANSE/Framework/InstrumentResolutions/PseudoVoigt.py:27: unused class 'PseudoVoigt' (60% confidence)
Src/MDANSE/Framework/InstrumentResolutions/Square.py:27: unused class 'Square' (60% confidence)
Src/MDANSE/Framework/InstrumentResolutions/Triangular.py:27: unused class 'Triangular' (60% confidence)
Src/MDANSE/Framework/Jobs/AngularCorrelation.py:25: unused class 'AngularCorrelation' (60% confidence)
Src/MDANSE/Framework/Jobs/AngularCorrelation.py:50: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/AngularCorrelation.py:55: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/AreaPerMolecule.py:29: unused class 'AreaPerMolecule' (60% confidence)
Src/MDANSE/Framework/Jobs/AreaPerMolecule.py:40: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/AreaPerMolecule.py:45: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/AverageStructure.py:28: unused class 'AverageStructure' (60% confidence)
Src/MDANSE/Framework/Jobs/AverageStructure.py:43: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/AverageStructure.py:48: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/CenterOfMassesTrajectory.py:32: unused class 'CenterOfMassesTrajectory' (60% confidence)
Src/MDANSE/Framework/Jobs/CenterOfMassesTrajectory.py:40: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/CenterOfMassesTrajectory.py:45: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/CoordinationNumber.py:25: unused class 'CoordinationNumber' (60% confidence)
Src/MDANSE/Framework/Jobs/CoordinationNumber.py:33: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/CoordinationNumber.py:35: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/CoordinationNumber.py:40: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/CroppedTrajectory.py:23: unused class 'CroppedTrajectory' (60% confidence)
Src/MDANSE/Framework/Jobs/CroppedTrajectory.py:28: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/CroppedTrajectory.py:32: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/CroppedTrajectory.py:37: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/CurrentCorrelationFunction.py:32: unused class 'CurrentCorrelationFunctionError' (60% confidence)
Src/MDANSE/Framework/Jobs/CurrentCorrelationFunction.py:36: unused class 'CurrentCorrelationFunction' (60% confidence)
Src/MDANSE/Framework/Jobs/CurrentCorrelationFunction.py:49: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/CurrentCorrelationFunction.py:53: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/CurrentCorrelationFunction.py:58: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/CurrentCorrelationFunction.py:239: unused attribute '_order' (60% confidence)
Src/MDANSE/Framework/Jobs/Density.py:33: unused class 'Density' (60% confidence)
Src/MDANSE/Framework/Jobs/Density.py:40: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/Density.py:45: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/DensityOfStates.py:27: unused class 'DensityOfStates' (60% confidence)
Src/MDANSE/Framework/Jobs/DensityOfStates.py:37: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/DensityOfStates.py:42: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/DensityProfile.py:31: unused class 'DensityProfile' (60% confidence)
Src/MDANSE/Framework/Jobs/DensityProfile.py:40: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/DensityProfile.py:45: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/DipoleAutoCorrelationFunction.py:24: unused class 'DipoleAutoCorrelationFunction' (60% confidence)
Src/MDANSE/Framework/Jobs/DipoleAutoCorrelationFunction.py:26: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/DipoleAutoCorrelationFunction.py:30: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/DipoleAutoCorrelationFunction.py:35: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/DistanceHistogram.py:34: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/DistanceHistogram.py:36: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/DynamicCoherentStructureFactor.py:29: unused class 'DynamicCoherentStructureFactorError' (60% confidence)
Src/MDANSE/Framework/Jobs/DynamicCoherentStructureFactor.py:33: unused class 'DynamicCoherentStructureFactor' (60% confidence)
Src/MDANSE/Framework/Jobs/DynamicCoherentStructureFactor.py:42: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/DynamicCoherentStructureFactor.py:47: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/DynamicIncoherentStructureFactor.py:28: unused class 'DynamicIncoherentStructureFactor' (60% confidence)
Src/MDANSE/Framework/Jobs/DynamicIncoherentStructureFactor.py:36: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/DynamicIncoherentStructureFactor.py:41: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/Eccentricity.py:25: unused class 'Eccentricity' (60% confidence)
Src/MDANSE/Framework/Jobs/Eccentricity.py:38: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/Eccentricity.py:43: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/Eccentricity.py:132: unused variable 'pm2' (60% confidence)
Src/MDANSE/Framework/Jobs/ElasticIncoherentStructureFactor.py:26: unused class 'ElasticIncoherentStructureFactor' (60% confidence)
Src/MDANSE/Framework/Jobs/ElasticIncoherentStructureFactor.py:39: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/ElasticIncoherentStructureFactor.py:44: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/GaussianDynamicIncoherentStructureFactor.py:28: unused class 'GaussianDynamicIncoherentStructureFactor' (60% confidence)
Src/MDANSE/Framework/Jobs/GaussianDynamicIncoherentStructureFactor.py:35: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/GaussianDynamicIncoherentStructureFactor.py:40: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/GeneralAutoCorrelationFunction.py:24: unused class 'GeneralAutoCorrelationFunction' (60% confidence)
Src/MDANSE/Framework/Jobs/GeneralAutoCorrelationFunction.py:29: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/GeneralAutoCorrelationFunction.py:33: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/GeneralAutoCorrelationFunction.py:38: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/GlobalMotionFilteredTrajectory.py:30: unused class 'GlobalMotionFilteredTrajectory' (60% confidence)
Src/MDANSE/Framework/Jobs/GlobalMotionFilteredTrajectory.py:51: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/GlobalMotionFilteredTrajectory.py:55: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/GlobalMotionFilteredTrajectory.py:60: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/IJob.py:98: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/Infrared.py:25: unused class 'Infrared' (60% confidence)
Src/MDANSE/Framework/Jobs/Infrared.py:27: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/Infrared.py:31: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/Infrared.py:36: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/JobStatus.py:82: unused variable 'current_progress' (100% confidence)
Src/MDANSE/Framework/Jobs/McStasVirtualInstrument.py:48: unused class 'McStasVirtualInstrument' (60% confidence)
Src/MDANSE/Framework/Jobs/McStasVirtualInstrument.py:58: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/McStasVirtualInstrument.py:62: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/McStasVirtualInstrument.py:67: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/McStasVirtualInstrument.py:376: unused attribute 'scan_flag' (60% confidence)
Src/MDANSE/Framework/Jobs/McStasVirtualInstrument.py:381: unused attribute 'scan_length' (60% confidence)
Src/MDANSE/Framework/Jobs/MeanSquareDisplacement.py:25: unused class 'MeanSquareDisplacement' (60% confidence)
Src/MDANSE/Framework/Jobs/MeanSquareDisplacement.py:53: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/MeanSquareDisplacement.py:58: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/MolecularTrace.py:24: unused class 'MolecularTrace' (60% confidence)
Src/MDANSE/Framework/Jobs/MolecularTrace.py:41: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/MolecularTrace.py:46: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/MoleculeFinder.py:32: unused class 'MoleculeFinder' (60% confidence)
Src/MDANSE/Framework/Jobs/MoleculeFinder.py:51: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/MoleculeFinder.py:56: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/NeutronDynamicTotalStructureFactor.py:30: unused class 'NeutronDynamicTotalStructureFactor' (60% confidence)
Src/MDANSE/Framework/Jobs/NeutronDynamicTotalStructureFactor.py:37: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/NeutronDynamicTotalStructureFactor.py:42: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/OrderParameter.py:28: unused class 'OrderParameter' (60% confidence)
Src/MDANSE/Framework/Jobs/OrderParameter.py:57: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/OrderParameter.py:61: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/OrderParameter.py:66: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/PairDistributionFunction.py:23: unused class 'PairDistributionFunction' (60% confidence)
Src/MDANSE/Framework/Jobs/PairDistributionFunction.py:40: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/PairDistributionFunction.py:42: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/PairDistributionFunction.py:47: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/PositionAutoCorrelationFunction.py:27: unused class 'PositionAutoCorrelationFunction' (60% confidence)
Src/MDANSE/Framework/Jobs/PositionAutoCorrelationFunction.py:34: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/PositionAutoCorrelationFunction.py:39: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/PositionPowerSpectrum.py:28: unused class 'PositionPowerSpectrum' (60% confidence)
Src/MDANSE/Framework/Jobs/PositionPowerSpectrum.py:36: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/PositionPowerSpectrum.py:41: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/RadiusOfGyration.py:25: unused class 'RadiusOfGyration' (60% confidence)
Src/MDANSE/Framework/Jobs/RadiusOfGyration.py:36: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/RadiusOfGyration.py:41: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/RigidBodyTrajectory.py:36: unused class 'RigidBodyTrajectory' (60% confidence)
Src/MDANSE/Framework/Jobs/RigidBodyTrajectory.py:50: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/RigidBodyTrajectory.py:54: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/RigidBodyTrajectory.py:59: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/RootMeanSquareDeviation.py:25: unused class 'RootMeanSquareDeviation' (60% confidence)
Src/MDANSE/Framework/Jobs/RootMeanSquareDeviation.py:36: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/RootMeanSquareDeviation.py:41: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/RootMeanSquareFluctuation.py:24: unused class 'RootMeanSquareFluctuation' (60% confidence)
Src/MDANSE/Framework/Jobs/RootMeanSquareFluctuation.py:34: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/RootMeanSquareFluctuation.py:39: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/SolventAccessibleSurface.py:27: unused class 'SolventAccessibleSurface' (60% confidence)
Src/MDANSE/Framework/Jobs/SolventAccessibleSurface.py:50: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/SolventAccessibleSurface.py:55: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/StaticStructureFactor.py:25: unused class 'StaticStructureFactor' (60% confidence)
Src/MDANSE/Framework/Jobs/StaticStructureFactor.py:33: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/StaticStructureFactor.py:35: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/StaticStructureFactor.py:40: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/StructureFactorFromScatteringFunction.py:22: unused class 'StructureFactorFromScatteringFunction' (60% confidence)
Src/MDANSE/Framework/Jobs/StructureFactorFromScatteringFunction.py:29: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/StructureFactorFromScatteringFunction.py:34: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/Temperature.py:30: unused class 'Temperature' (60% confidence)
Src/MDANSE/Framework/Jobs/Temperature.py:42: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/Temperature.py:47: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/TrajectoryEditor.py:32: unused class 'TrajectoryEditor' (60% confidence)
Src/MDANSE/Framework/Jobs/TrajectoryEditor.py:41: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/TrajectoryEditor.py:46: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/UnfoldedTrajectory.py:24: unused class 'UnfoldedTrajectory' (60% confidence)
Src/MDANSE/Framework/Jobs/UnfoldedTrajectory.py:33: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/UnfoldedTrajectory.py:35: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/UnfoldedTrajectory.py:40: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/VanHoveFunctionDistinct.py:27: unused class 'VanHoveFunctionDistinct' (60% confidence)
Src/MDANSE/Framework/Jobs/VanHoveFunctionDistinct.py:43: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/VanHoveFunctionDistinct.py:45: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/VanHoveFunctionSelf.py:25: unused class 'VanHoveFunctionSelf' (60% confidence)
Src/MDANSE/Framework/Jobs/VanHoveFunctionSelf.py:39: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/VanHoveFunctionSelf.py:41: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/VelocityAutoCorrelationFunction.py:26: unused class 'VelocityAutoCorrelationFunction' (60% confidence)
Src/MDANSE/Framework/Jobs/VelocityAutoCorrelationFunction.py:56: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/VelocityAutoCorrelationFunction.py:61: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/Voronoi.py:54: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/Voronoi.py:59: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/Jobs/XRayStaticStructureFactor.py:48: unused class 'XRayStaticStructureFactor' (60% confidence)
Src/MDANSE/Framework/Jobs/XRayStaticStructureFactor.py:56: unused variable 'enabled' (60% confidence)
Src/MDANSE/Framework/Jobs/XRayStaticStructureFactor.py:58: unused variable 'category' (60% confidence)
Src/MDANSE/Framework/Jobs/XRayStaticStructureFactor.py:63: unused variable 'ancestor' (60% confidence)
Src/MDANSE/Framework/OutputVariables/IOutputVariable.py:106: unused attribute 'tags' (60% confidence)
Src/MDANSE/Framework/OutputVariables/LineOutputVariable.py:20: unused class 'LineOutputVariable' (60% confidence)
Src/MDANSE/Framework/OutputVariables/SurfaceOutputVariable.py:20: unused class 'SurfaceOutputVariable' (60% confidence)
Src/MDANSE/Framework/OutputVariables/VolumeOutputVariable.py:20: unused class 'VolumeOutputVariable' (60% confidence)
Src/MDANSE/Framework/Projectors/AxialProjector.py:24: unused class 'AxialProjector' (60% confidence)
Src/MDANSE/Framework/Projectors/NullProjector.py:20: unused class 'NullProjector' (60% confidence)
Src/MDANSE/Framework/Projectors/PlanarProjector.py:24: unused class 'PlanarProjector' (60% confidence)
Src/MDANSE/Framework/QVectors/ApproximateDispersionQVectors.py:26: unused class 'ApproximateDispersionQVectors' (60% confidence)
Src/MDANSE/Framework/QVectors/CircularLatticeQVectors.py:27: unused class 'CircularLatticeQVectors' (60% confidence)
Src/MDANSE/Framework/QVectors/CircularQVectors.py:25: unused class 'CircularQVectors' (60% confidence)
Src/MDANSE/Framework/QVectors/DispersionLatticeQVectors.py:24: unused class 'DispersionLatticeQVectors' (60% confidence)
Src/MDANSE/Framework/QVectors/GridQVectors.py:26: unused class 'GridQVectors' (60% confidence)
Src/MDANSE/Framework/QVectors/IQVectors.py:55: unused method 'setStatus' (60% confidence)
Src/MDANSE/Framework/QVectors/LinearLatticeQVectors.py:27: unused class 'LinearLatticeQVectors' (60% confidence)
Src/MDANSE/Framework/QVectors/LinearQVectors.py:24: unused class 'LinearQVectors' (60% confidence)
Src/MDANSE/Framework/QVectors/MillerIndicesQVectors.py:24: unused class 'MillerIndicesQVectors' (60% confidence)
Src/MDANSE/Framework/QVectors/SphericalLatticeQVectors.py:25: unused class 'SphericalLatticeQVectors' (60% confidence)
Src/MDANSE/Framework/QVectors/SphericalQVectors.py:25: unused class 'SphericalQVectors' (60% confidence)
Src/MDANSE/Framework/Status.py:35: unused attribute '_elapsedTime' (60% confidence)
Src/MDANSE/Framework/Status.py:55: unused variable 'current_progress' (100% confidence)
Src/MDANSE/Framework/Status.py:71: unused method 'get_current_step' (60% confidence)
Src/MDANSE/Framework/Status.py:74: unused method 'get_elapsed_time' (60% confidence)
Src/MDANSE/Framework/Status.py:77: unused method 'get_number_of_steps' (60% confidence)
Src/MDANSE/Framework/Status.py:80: unused method 'is_finished' (60% confidence)
Src/MDANSE/Framework/Status.py:83: unused method 'is_running' (60% confidence)
Src/MDANSE/Framework/Units.py:50: unused variable 'unit_lookup' (60% confidence)
Src/MDANSE/Framework/Units.py:706: unused method 'add_unit' (60% confidence)
Src/MDANSE/Framework/Units.py:713: unused method 'delete_unit' (60% confidence)
Src/MDANSE/Framework/UserDefinitionStore.py:46: unused property 'definitions' (60% confidence)
Src/MDANSE/Framework/UserDefinitionStore.py:89: unused method 'remove_definition' (60% confidence)
Src/MDANSE/Framework/UserDefinitionStore.py:100: unused method 'set_definition' (60% confidence)
Src/MDANSE/IO/FortranFormat.py:143: unused method 'isBlank' (60% confidence)
Src/MDANSE/IO/IOUtils.py:59: unused function 'load_variables' (60% confidence)
Src/MDANSE/IO/MinimalPDBReader.py:67: unused attribute 'periodic' (60% confidence)
Src/MDANSE/IO/MinimalPDBReader.py:73: unused attribute 'periodic' (60% confidence)
Src/MDANSE/IO/MinimalPDBReader.py:75: unused attribute 'periodic' (60% confidence)
Src/MDANSE/IO/PDB.py:409: unused method 'writeComment' (60% confidence)
Src/MDANSE/IO/PDB.py:755: unused method 'changeName' (60% confidence)
Src/MDANSE/IO/PDB.py:894: unused method 'hasDesoxyribose' (60% confidence)
Src/MDANSE/IO/PDB.py:964: unused method 'sequence' (60% confidence)
Src/MDANSE/IO/PDB.py:1001: unused method 'removeResidues' (60% confidence)
Src/MDANSE/IO/PDB.py:1372: unused attribute 'given' (60% confidence)
Src/MDANSE/IO/PDB.py:1373: unused attribute 'serial' (60% confidence)
Src/MDANSE/IO/PDB.py:1430: unused method 'renumberAtoms' (60% confidence)
Src/MDANSE/IO/TextFile.py:142: unused method 'writelines' (60% confidence)
Src/MDANSE/Mathematics/Geometry.py:71: unused function 'build_cartesian_axes' (60% confidence)
Src/MDANSE/Mathematics/Geometry.py:123: unused function 'random_points_on_disk' (60% confidence)
Src/MDANSE/Mathematics/Geometry.py:157: unused function 'get_euler_angles' (60% confidence)
Src/MDANSE/Mathematics/LinearAlgebra.py:68: unused variable 'memo' (100% confidence)
Src/MDANSE/Mathematics/LinearAlgebra.py:203: unused method 'asTensor' (60% confidence)
Src/MDANSE/Mathematics/LinearAlgebra.py:322: unused method 'normalized' (60% confidence)
Src/MDANSE/Mathematics/LinearAlgebra.py:555: unused method 'symmetricalPart' (60% confidence)
Src/MDANSE/Mathematics/LinearAlgebra.py:581: unused method 'eigenvalues' (60% confidence)
Src/MDANSE/Mathematics/LinearAlgebra.py:592: unused method 'diagonalization' (60% confidence)
Src/MDANSE/Mathematics/LinearAlgebra.py:648: unused variable 'ey' (60% confidence)
Src/MDANSE/Mathematics/Transformation.py:148: unused method 'displacement' (60% confidence)
Src/MDANSE/Mathematics/Transformation.py:486: unused class 'Inversion' (60% confidence)
Src/MDANSE/mdtraj/utils.py:40: unused function 'ensure_type' (60% confidence)
Src/MDANSE/mdtraj/utils.py:161: unused function 'cast_indices' (60% confidence)
Src/MDANSE/MolecularDynamics/Connectivity.py:186: unused variable 'nstep' (60% confidence)
Src/MDANSE/MolecularDynamics/Connectivity.py:192: unused variable 'vecnum' (60% confidence)
Src/MDANSE/MolecularDynamics/Connectivity.py:264: unused method 'add_point' (60% confidence)
Src/MDANSE/MolecularDynamics/Connectivity.py:264: unused variable 'point' (100% confidence)
Src/MDANSE/MolecularDynamics/Connectivity.py:267: unused method 'find_collisions' (60% confidence)
Src/MDANSE/MolecularDynamics/Connectivity.py:270: unused method 'get_neighbour' (60% confidence)
Src/MDANSE/MolecularDynamics/Connectivity.py:270: unused variable 'point' (100% confidence)
Src/MDANSE/MolecularDynamics/Trajectory.py:704: unused function 'partition_universe' (60% confidence)
Src/MDANSE/MolecularDynamics/Trajectory.py:712: unused function 'read_atoms_trajectory' (60% confidence)
Src/MDANSE/MolecularDynamics/Trajectory.py:730: unused variable 'serie' (60% confidence)
Src/MDANSE/MolecularDynamics/TrajectoryUtils.py:34: unused class 'MolecularDynamicsError' (60% confidence)
Src/MDANSE/MolecularDynamics/TrajectoryUtils.py:38: unused class 'UniverseAdapterError' (60% confidence)
Src/MDANSE/NeutronInstruments/Coverage/TotalCoverage.py:20: unused class 'TotalCoverage' (60% confidence)
Src/MDANSE/NeutronInstruments/Coverage/TotalCoverage.py:21: unused method 'in_range' (60% confidence)
Src/MDANSE/NeutronInstruments/IdealInstrument.py:25: unused attribute 'coverage' (60% confidence)
Src/MDANSE/NeutronInstruments/IdealInstrument.py:26: unused attribute 'spectrum' (60% confidence)
Src/MDANSE/NeutronInstruments/Method/NullMethod.py:21: unused class 'NullMethod' (60% confidence)
Src/MDANSE/NeutronInstruments/Method/NullMethod.py:22: unused method 'apply_resolution' (60% confidence)
Src/MDANSE/NeutronInstruments/Method/TOFDiffraction.py:21: unused class 'TOFDiffraction' (60% confidence)
Src/MDANSE/NeutronInstruments/Method/TOFDiffraction.py:22: unused method 'apply_resolution' (60% confidence)
Src/MDANSE/NeutronInstruments/Resolution/IdealResolution.py:22: unused class 'IdealResolution' (60% confidence)
Src/MDANSE/NeutronInstruments/Resolution/IdealResolution.py:23: unused method 'resolution_window' (60% confidence)
Src/MDANSE/NeutronInstruments/Resolution/IdealResolution.py:23: unused variable 'Ef' (100% confidence)
Src/MDANSE/NeutronInstruments/Resolution/IdealResolution.py:23: unused variable 'Ei' (100% confidence)
Src/MDANSE/NeutronInstruments/Spectrum/FlatSpectrum.py:20: unused class 'FlatSpectrum' (60% confidence)
Src/MDANSE/NeutronInstruments/Spectrum/FlatSpectrum.py:21: unused method 'flux_at_wavelength' (60% confidence)
Src/MDANSE/NeutronInstruments/Spectrum/FlatSpectrum.py:21: unused variable 'wavelength' (100% confidence)
Src/MDANSE/Scripts/mdanse.py:41: unused method 'format_description' (60% confidence)
Src/MDANSE/Scripts/mdanse.py:57: unused method 'format_option' (60% confidence)
Tests/UnitTests/test_databases.py:27: unused import 'Databases' (90% confidence)
1 day ago
● public
Licenserecon
Command: lrc -l
Exit code: 3
en: Versions: licenserecon '11.0' licensecheck '3.3.9-1'
Parsing Source Tree ....
Reading d/copyright ....
Running licensecheck ....
d/copyright | licensecheck
GPL-3 | LGPL-2.1+ Doc/conf_api.py
GPL-3 | LGPL-2.1+ Doc/conf_help.py
GPL-3 | GPL-3+ Extensions/atoms_in_shell.pyx
GPL-3 | GPL-3+ Extensions/com_trajectory.pyx
GPL-3 | GPL-3+ Extensions/contiguous_coordinates.pyx
GPL-3 | GPL-3+ Extensions/fast_calculation.pyx
GPL-3 | GPL-3+ Extensions/mic_fast_calc.pyx
GPL-3 | GPL-3+ Extensions/sas_fast_calc.pyx
GPL-3 | GPL-3+ Extensions/van_hove.pyx
BSD-3-Clause | BSD-3-clause Extensions/xtc/include/ms_stdint.h
BSD-2-Clause | BSD-2-clause Extensions/xtc/include/xdrfile.h
BSD-2-Clause | BSD-2-clause Extensions/xtc/include/xdrfile_trr.h
BSD-2-Clause | BSD-2-clause Extensions/xtc/include/xdrfile_xtc.h
GPL-3 | BSD-2-clause Extensions/xtc/src/xdrfile.c
BSD-2-Clause | BSD-2-clause Extensions/xtc/src/xdrfile_trr.c
GPL-3 | BSD-2-clause Extensions/xtc/src/xdrfile_xtc.c
LGPL-2.1+ | LGPL-2.1+ Extensions/xtc/trr.pyx
LGPL-2.1+ | LGPL-2.1+ Extensions/xtc/xtc.pyx
GPL-3 | GPL-3 PKG-INFO
GPL-3 | GPL-3+ pyproject.toml
GPL-3 | GPL-3+ Src/MDANSE/Chemistry/ChemicalEntity.py
GPL-3 | GPL-3+ Src/MDANSE/Chemistry/Databases.py
GPL-3 | GPL-3+ Src/MDANSE/Chemistry/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Chemistry/Structrures.py
GPL-3 | GPL-3+ Src/MDANSE/Core/Error.py
GPL-3 | GPL-3+ Src/MDANSE/Core/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Core/Platform.py
GPL-3 | GPL-3+ Src/MDANSE/Core/Singleton.py
GPL-3 | GPL-3+ Src/MDANSE/Core/SubclassFactory.py
GPL-3 | GPL-3 Src/MDANSE.egg-info/PKG-INFO
GPL-3 | GPL-3+ Src/MDANSE/Extensions/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/AtomMapping/atom_mapping.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/AtomMapping/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/AtomSelector/all_selector.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/AtomSelector/atom_selectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/AtomSelector/group_selectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/AtomSelector/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/AtomSelector/molecule_selectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/AtomSelector/selector.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurable.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/ASEFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/AseInputFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/AtomMappingConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/AtomSelectionConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/AtomsListConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/AtomTransmutationConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/AxisSelectionConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/BasisSelectionConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/BooleanConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/ConfigFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/CorrelationFramesConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/DerivativeOrderConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/FieldFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/FileWithAtomDataConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/FloatConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/FramesConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/GroupingLevelConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/HDFInputFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/HDFTrajectoryConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/IConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/InputDirectoryConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/InputFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/InstrumentResolutionConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/IntegerConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/InterpolationOrderConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/McStasInstrumentConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/McStasOptionsConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/McStasParametersConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/MDFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/MDMCTrajectoryConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/MockTrajectoryConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/MoleculeSelectionConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/MultipleChoicesConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/OutputDirectoryConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/OutputFilesConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/OutputStructureConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/OutputTrajectoryConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/PartialChargeConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/ProjectionConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/PythonObjectConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/PythonScriptConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/QVectorsConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/RangeConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/RunningModeConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/SingleChoiceConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/SingleOutputFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/StringConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/TrajectoryVariableConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/UnitCellConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/VectorConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/WeightsConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/XDATCARFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/XTDFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Configurators/XYZFileConfigurator.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/ASE.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/CASTEP.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/CHARMM.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/Converter.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/CP2K.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/DCD.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/DFTB.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/Discover.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/DL_POLY.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/DMol.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/Forcite.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/Gromacs.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/ImprovedASE.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/LAMMPS.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/NAMD.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/VASP.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Converters/XPLOR.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Formats/HDFFormat.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Formats/IFormat.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Formats/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Formats/MDAFormat.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Formats/MDTFormat.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Formats/SVGFormat.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Formats/TextFormat.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Handlers/ColorizingStreamHandler.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Handlers/IHandler.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Handlers/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Handlers/LogfileHandler.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InputData/EmptyData.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InputData/HDFTrajectoryInputData.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InputData/IInputData.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InputData/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InputData/InputFileData.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InputData/MockTrajectoryInputData.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InputData/MVITraceInputData.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InputData/PeriodicTableInputData.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InstrumentResolutions/Gaussian.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InstrumentResolutions/Ideal.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InstrumentResolutions/IInstrumentResolution.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InstrumentResolutions/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InstrumentResolutions/Lorentzian.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InstrumentResolutions/PseudoVoigt.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InstrumentResolutions/Square.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/InstrumentResolutions/Triangular.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/AngularCorrelation.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/AreaPerMolecule.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/AverageStructure.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/CenterOfMassesTrajectory.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/CoordinationNumber.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/CroppedTrajectory.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/CurrentCorrelationFunction.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/DensityOfStates.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/DensityProfile.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/Density.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/DipoleAutoCorrelationFunction.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/DistanceHistogram.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/DynamicCoherentStructureFactor.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/DynamicIncoherentStructureFactor.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/Eccentricity.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/ElasticIncoherentStructureFactor.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/GaussianDynamicIncoherentStructureFactor.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/GeneralAutoCorrelationFunction.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/GlobalMotionFilteredTrajectory.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/IJob.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/Infrared.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/JobStatus.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/McStasVirtualInstrument.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/MeanSquareDisplacement.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/MolecularTrace.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/MoleculeFinder.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/NeutronDynamicTotalStructureFactor.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/OrderParameter.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/PairDistributionFunction.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/PositionAutoCorrelationFunction.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/PositionPowerSpectrum.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/RadiusOfGyration.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/RigidBodyTrajectory.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/RootMeanSquareDeviation.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/RootMeanSquareFluctuation.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/SolventAccessibleSurface.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/StaticStructureFactor.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/StructureFactorFromScatteringFunction.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/Temperature.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/TrajectoryEditor.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/UnfoldedTrajectory.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/VanHoveFunctionDistinct.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/VanHoveFunctionSelf.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/VelocityAutoCorrelationFunction.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/Voronoi.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Jobs/XRayStaticStructureFactor.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/OutputVariables/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/OutputVariables/IOutputVariable.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/OutputVariables/LineOutputVariable.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/OutputVariables/SurfaceOutputVariable.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/OutputVariables/VolumeOutputVariable.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Projectors/AxialProjector.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Projectors/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Projectors/IProjector.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Projectors/NullProjector.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Projectors/PlanarProjector.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/ApproximateDispersionQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/CircularLatticeQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/CircularQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/DispersionLatticeQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/GridQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/IQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/LatticeQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/LinearLatticeQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/LinearQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/MillerIndicesQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/SphericalLatticeQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/QVectors/SphericalQVectors.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Status.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/Units.py
GPL-3 | GPL-3+ Src/MDANSE/Framework/UserDefinitionStore.py
GPL-3 | GPL-3+ Src/MDANSE/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/IO/FortranFormat.py
GPL-3 | GPL-3+ Src/MDANSE/IO/HDF5.py
GPL-3 | GPL-3+ Src/MDANSE/IO/HDF.py
GPL-3 | GPL-3+ Src/MDANSE/IO/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/IO/IOUtils.py
GPL-3 | GPL-3+ Src/MDANSE/IO/MinimalPDBReader.py
GPL-3 | GPL-3+ Src/MDANSE/IO/PDBExportFilters.py
GPL-3 | GPL-3+ Src/MDANSE/IO/PDB.py
GPL-3 | GPL-3+ Src/MDANSE/IO/PDBReader.py
GPL-3 | GPL-3+ Src/MDANSE/IO/PDBSpaceGroups.py
GPL-3 | GPL-3+ Src/MDANSE/IO/TextFile.py
GPL-3 | GPL-3+ Src/MDANSE/Mathematics/Arithmetic.py
GPL-3 | GPL-3+ Src/MDANSE/Mathematics/Geometry.py
GPL-3 | GPL-3+ Src/MDANSE/Mathematics/Graph.py
GPL-3 | GPL-3+ Src/MDANSE/Mathematics/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Mathematics/LinearAlgebra.py
GPL-3 | GPL-3+ Src/MDANSE/Mathematics/Signal.py
GPL-3 | GPL-3+ Src/MDANSE/Mathematics/Transformation.py
GPL-3 | LGPL-2.1+ Src/MDANSE/mdtraj/utils.py
GPL-3 | GPL-3+ Src/MDANSE/MolecularDynamics/Analysis.py
GPL-3 | GPL-3+ Src/MDANSE/MolecularDynamics/Configuration.py
GPL-3 | GPL-3+ Src/MDANSE/MolecularDynamics/Connectivity.py
GPL-3 | GPL-3+ Src/MDANSE/MolecularDynamics/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/MolecularDynamics/MockTrajectory.py
GPL-3 | GPL-3+ Src/MDANSE/MolecularDynamics/Trajectory.py
GPL-3 | GPL-3+ Src/MDANSE/MolecularDynamics/TrajectoryUtils.py
GPL-3 | GPL-3+ Src/MDANSE/MolecularDynamics/UnitCell.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Coverage/Coverage.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Coverage/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Coverage/TotalCoverage.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/IdealInstrument.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Method/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Method/NullMethod.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Method/ScatteringMethod.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Method/TOFDiffraction.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/NeutronInstrument.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Resolution/IdealResolution.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Resolution/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Resolution/Resolution.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Spectrum/FlatSpectrum.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Spectrum/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/NeutronInstruments/Spectrum/Spectrum.py
GPL-3 | GPL-3+ Src/MDANSE/Scripts/__init__.py
GPL-3 | GPL-3+ Src/MDANSE/Scripts/mdanse.py
GPL-3 | GPL-3+ Src/MDANSE/Trajectory/H5MDTrajectory.py
GPL-3 | GPL-3+ Src/MDANSE/Trajectory/MdanseTrajectory.py
GPL-3 | GPL-3+ Tests/UnitTests/test_chemical_entity.py
GPL-3 | GPL-3+ Tests/UnitTests/test_configurable.py
GPL-3 | GPL-3+ Tests/UnitTests/test_configuration.py
GPL-3 | GPL-3+ Tests/UnitTests/test_configurator.py
GPL-3 | GPL-3+ Tests/UnitTests/test_databases.py
GPL-3 | GPL-3+ Tests/UnitTests/test_geometry.py
GPL-3 | GPL-3+ Tests/UnitTests/test_HDF5Trajectory.py
GPL-3 | GPL-3+ Tests/UnitTests/test_mock_trajectory.py
GPL-3 | GPL-3+ Tests/UnitTests/test_molecular_dynamics.py
GPL-3 | GPL-3+ Tests/UnitTests/test_pdb_reader.py
GPL-3 | GPL-3+ Tests/UnitTests/test_trajectory.py
GPL-3 | GPL-3+ Tests/UnitTests/test_units.py