python-primer3-py 2.3.1-1
Package Information
| Description | Python wrapper for DNA primer design and analysis Primers are short, single-stranded DNA or RNA molecules that provide a starting point for DNA synthesis. In the polymerase chain reaction (PCR), a pair of primers defines the DNA segment to be amplified. Primer3-py provides Python bindings for the Primer3 DNA primer design library. It supports PCR primer selection, melting temperature calculations, and thermodynamic analysis of hairpins, homodimers and heterodimers. The bindings use a modified Primer3 library with thread-safe thermodynamic calculations and a Cython interface for efficient access from Python. |
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| Maintainer | Steffen Moeller <moeller@debian.org> |
| Changed By | Steffen Moeller <moeller@debian.org> |
| Sponsor | moeller@debian.org |
| Distribution | unstable |
| Architecture | any |
| VCS | git: https://salsa.debian.org/med-team/python-primer3-py.git (browse) |
| Closes | #1149890 |
| Tracker | https://tracker.debian.org/pkg/python-primer3-py |
| Uploaded | 3 hours ago |
New Package Report
.changes
| Source | python-primer3-py |
|---|---|
| Version | 2.3.1-1 |
| Changed-By | Steffen Moeller |
| Architecture | source amd64 |
| Distribution | unstable |
| Date | Sat, 03 Oct 2026 19:18:45 +0200 |
Changelog
python-primer3-py (2.3.1-1) unstable; urgency=medium . * Initial release (Closes: #1149890).
.dsc
| Component | main |
|---|---|
| Package-List | python3-primer3-py deb python optional arch=any |
| Section | python |
| Priority | optional |
debian/copyright
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: primer3-py Upstream-Contact: Ben Pruitt <bpruittvt@gmail.com>, Nick Conway <a.grinner@gmail.com> Source: https://github.com/libnano/primer3-py Files: * Copyright: 2014-2026 Ben Pruitt and Nick Conway 2014-2026 Wyss Institute for Biologically Inspired Engineering License: GPL-2+ Files: primer3/src/libprimer3/* Copyright: 1996-2022 Whitehead Institute for Biomedical Research 1996-2022 Steve Rozen and Helen Skaletsky 1996-2022 Andreas Untergasser 2014-2023 Ben Pruitt and Nick Conway 2014-2016 Wyss Institute for Biologically Inspired Engineering License: GPL-2+ Comment: The bundled Primer3 2.6.1 sources include changes to support the Python bindings and thread-safe calculations. They cannot be replaced by the unmodified system Primer3 library; see docs/included_primer3_modifications.md and docs/miscellany.md. Files: primer3/src/libprimer3/amplicontm.c primer3/src/libprimer3/amplicontm.h primer3/src/libprimer3/amplicontm_main.c Copyright: 2021 Andreas Untergasser License: GPL-3+ Comment: Amplicon3 is based on MeltPolymer.c from Erik Wright's DECIPHER package, which is licensed under GPL-3. Files: primer3/src/libprimer3/klib/* Copyright: 2008-2011 Attractive Chaos <attractor@live.co.uk> License: Expat Files: debian/* Copyright: 2026 Steffen Moeller <moeller@debian.org> License: GPL-2+ License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . On Debian systems, the complete text of the GNU General Public License version 2 can be found in /usr/share/common-licenses/GPL-2. License: GPL-3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . On Debian systems, the complete text of the GNU General Public License version 3 can be found in /usr/share/common-licenses/GPL-3. License: Expat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.