Review: r-bioc-cigarillo 1.2.1+dfsg-1
Package Information
| Description | Efficient manipulation of CIGAR strings CIGAR stands for Concise Idiosyncratic Gapped Alignment Report. CIGAR strings are found in the BAM files produced by most aligners and in the AIRR-formatted output produced by IgBLAST. The cigarillo package provides functions to parse and inspect CIGAR strings, trim them, turn them into ranges of positions relative to the "query space" or "reference space", and project positions or sequences from one space to the other. Note that these operations are low-level operations that the user rarely needs to perform directly. More typically, they are performed behind the scene by higher-level functionality implemented in other packages like Bioconductor packages GenomicAlignments and igblastr. |
|---|---|
| Maintainer | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
| Changed By | Charles Plessy <plessy@debian.org> |
| Sponsor | plessy@debian.org |
| Distribution | unstable |
| Architecture | any |
| VCS | git: https://salsa.debian.org/r-pkg-team/r-bioc-cigarillo.git (browse) |
| Closes | #1143588 |
| Tracker | https://tracker.debian.org/pkg/r-bioc-cigarillo |
| Uploaded | 5 days ago |
New Package Report
.changes
| Architecture | source amd64 |
|---|---|
| Distribution | unstable |
| Date | Wed, 05 Aug 2026 12:49:11 +0900 |
| Source | r-bioc-cigarillo |
| Version | 1.2.1+dfsg-1 |
| Changed-By | Charles Plessy |
Changelog
r-bioc-cigarillo (1.2.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #1143588)
.dsc
| Priority | optional |
|---|---|
| Component | main |
| Package-List | r-bioc-cigarillo deb gnu-r optional arch=any |
| Section | gnu-r |
debian/copyright
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: https://bioconductor.org/packages/cigarillo/ Upstream-Name: cigarillo Upstream-Contact: Hervé Pagès <hpages.on.github@gmail.com>, Files-Excluded: build */inst/doc/*.html Files: * Copyright: 2025-2026 Hervé Pagès (ORCID: <https://orcid.org/0009-0002-8272-4522>), Valerie Obenchain, Michael Lawrence, Patrick Aboyoun, Fedor Bezrukov, Martin Morgan License: Artistic-2.0 Files: debian/* Copyright: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> License: Artistic-2.0 License: Artistic-2.0 On Debian systems, the full text of the Artistic 2.0 license is available on `/usr/share/common-licenses/Artistic-2.0`.
Review Information
accepted — allocated to mechtilde 4 days ago, started 4 days ago, completed 4 days ago.