DFSG, Licensing & New Packages Team

vmtk (1.5.0~git20260410.ba7cf0f-1) unstable; urgency=medium
 .
   [ Steffen Moeller ]
   * debian/upstream/metadata:
     - newly created
     - list reference to paper and entries registries, amongst with biii
   * debian/upstream/edam: Providing minimal annotation.
 .
   [ Andreas Tille ]
   * Point Vcs fields to salsa.debian.org
   * Build-Depends vtk7 packages
   * debhelper-compat 13 (routine-update)
   * Secure URI in copyright format (routine-update)
   * Drop ancient X-Python-Version field (routine-update)
   * Add salsa-ci file (routine-update)
   * Update renamed lintian tag names in lintian overrides.
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
     Repository-Browse.
 .
   [ Drew Parsons ]
   * update packages to Python 3 (remove Python 2). Closes: #938795.
   * Build-Depends: libvtkgdcm-dev not libvtkgdcm2-dev
 .
   [ Francesco Ballarin ]
   * Tentatively reinstate package into the debian archive, after it was
     removed on Fri, 24 Jun 2022 14:47:59 +0000 (see Bug: #1008792).
     Upstream has restarted some maintenance of the package, and
     https://github.com/vmtk/vmtk/pull/484
     mentions that future releases will be published on PyPI.
   * Update d/watch to v5. Until proper releases are made upstream, we will
     simply fetch the current HEAD and provide release versions of the form
     v1.5.0~git{date}.{commit}. The latest release available on GitHub
     (dated 2018) is v1.4.0, but upstream commit bf0748b8 (dated 2022)
     has increased the version number to 1.5.0 in the main CMakeLists.txt file
     - New ABI 1.5, instead of former one 1.3 that was present in the latest
       debian upload.
   * Remove outdated TODO file
   * Add F. Ballarin to uploaders
   * Standards-Version: 4.7.4 (routine-update)
   * Fix Maintainer name of Debian Science team (routine-update)
   * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
   * Avoid explicitly specifying -Wl,--as-needed linker flag.
   * Reorder Files paragraphs in debian/copyright by directory depth.
   * Refresh debian/patches/tetgen-O1.diff
   * Remove outdated copyright_hints file
   * Build depend on libinsighttoolkit5-dev, instead of on ancient
     libinsighttoolkit4-dev.
   * Drop obsolete fields XS-Autobuild and Rules-Requires-Root from d/control
   * Disable Salsa CI
   * Drop -DVTK_VMTK_WRAP_TCL:BOOL=OFF from d/rules, since cmake states that the
     option is actually unused.
   * Add -DVTK_VMTK_WRAP_JAVA:BOOL=OFF to d/rules, since without it we get a
     configuration error saying that wrapping Java is not possible with vtk9.
   * Build depend on libfreetype-dev instead of on ancient libfreetype6-dev
   * Explicitly pass -DVMTK_PYTHON_VERSION to cmake, otherwise the folder
     python. gets created in dist-packages, instead of (e.g.) python 3.13
   * Explicitly pass -DVMTK_SCRIPTS_INSTALL_LIB_DIR,
     -DVMTK_CONTRIB_SCRIPTS_INSTALL_LIB_DIR, -DPYPES_MODULE_INSTALL_LIB_DIR,
     -DVTK_VMTK_MODULE_INSTALL_LIB_DIR to ensure that scripts are
     installed in dist-packages rather than site-packages. The flag
     -DVMTK_MODULE_INSTALL_LIB_DIR was instead already provided.
   * Temporarily skip installing generated *.cmake files, because they seem to
     hardcode the path of the source directory, resulting in non-portable cmake
     files
   * Disable -DVMTK_MINIMAL_INSTALL, so that end user scripts are installed in
     /usr/bin
   * Change shebang to use python3 instead of python, to avoid having to add a
     runtime dependency on python-is-python3
   * Move libtet.a from /usr/bin to /usr/lib
   * Remove spurious /usr/bin/__init__, which comes because CMake iterates
     over all vmtk scripts and strips the .py extension. The __init__.py file
     is clearly not meant to be a script.
   * Fix old-fsf-address-in-copyright-file lintian warning
   * Add build dependency and runtime dependency on python3-joblib, because
     the script vmtkcenterlinesnetwork.py imports it.
   * Enable CMake option VMTK_USE_RENDERING in order to build
     vtkvmtkImagePlaneWidget and vtkvmtkInteractorStyleTrackballCamera
   * Add patch test_vtkvmtkStaticTemporal_incompatible_vtk9.2.diff to disable
     checks of vtkvmtkStaticTemporalInterpolatedVelocityField and
     vtkvmtkStaticTemporalStreamTracer, which are incompatible with vtk >= 9.2
   * Add autopkgtest

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: vmtk
Upstream-Contact: vmtk-users@lists.sourceforge.net
Source: http://www.vmtk.org
Disclaimer:
 This package is not part of the main Debian GNU/Linux distribution,
 but uploaded to the non-free section. This is because it includes
 non-free software (Tetgen). However, the (Tetgen) license does not
 forbid Debian from using autobuilders to create binary packages.
 .
 Most of the excluded files are non-distributable, and useless for Debian anyway.
Files-Excluded: */*.dll

Files: *
Copyright: 2004-2012, Luca Antiga, David Steinman
License: BSD-3-clause

Files: vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementFunction.h
 vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementFunction.txx
 vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementImageFilter.txx
 vtkVmtk/Segmentation/itkFastMarchingDirectionalFreezeImageFilter.h
 vtkVmtk/Segmentation/itkFastMarchingDirectionalFreezeImageFilter.txx
 vtkVmtk/Segmentation/itkFastMarchingUpwindGradientImageFilter.h
 vtkVmtk/Segmentation/itkFastMarchingUpwindGradientImageFilter.txx
 vtkVmtk/Segmentation/itkHessianSmoothed3DToVesselnessMeasureImageFilter.h
 vtkVmtk/Segmentation/itkHessianSmoothed3DToVesselnessMeasureImageFilter.txx
 vtkVmtk/Segmentation/itkSymmetricEigenVectorAnalysisImageFilter.h
Copyright: 1999-2009, Insight Software Consortium
License: BSD-3-clause

Files: vtkVmtk/Common/vtkvmtkWin32Header.h
 vtkVmtk/Misc/vtkvmtkStaticTemporalInterpolatedVelocityField.cxx
 vtkVmtk/Misc/vtkvmtkStaticTemporalStreamTracer.cxx
Copyright: 1993-2009, Ken Martin
 1993-2009, Will Schroeder
 1993-2009, Bill Lorensen
License: The-Visualization-Toolkit-(VTK)-License

Files: vtkVmtk/ComputationalGeometry/vtkvmtkAppendFilter.h
 vtkVmtk/Misc/vtkvmtkStaticTemporalInterpolatedVelocityField.h
 vtkVmtk/Misc/vtkvmtkStaticTemporalStreamTracer.h
Copyright: 1993-2009, Ken Martin
 1993-2009, Will Schroeder
 1993-2009, Bill Lorensen
 2004-2012, Luca Antiga
 2004-2012, David Steinman
License: The-Visualization-Toolkit-(VTK)-License

Files: vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITK.h
 vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesReader.cxx
 vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesReader.h
 vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesScalarReader.cxx
 vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesScalarReader.h
 vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageWriter.cxx
 vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageWriter.h
 vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKUtility.h
 vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKWin32Header.h
Copyright: Brigham and Women's Hospital (BWH)
Comment:
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 3. This Software License does not grant any rights with respect to
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Files: vtkVmtk/Utilities/OpenNL/nl.h
 vtkVmtk/Utilities/OpenNL/nl_single_file.c
Copyright: 2004-2010, Bruno Levy <levy@loria.fr>
License: BSD-3-style
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
 .
 * Redistributions of source code must retain the above copyright notice,
 this list of conditions and the following disclaimer.
 * Redistributions in binary form must reproduce the above copyright notice,
 this list of conditions and the following disclaimer in the documentation
 and/or other materials provided with the distribution.
 * Neither the name of the ALICE Project-Team nor the names of its
 contributors may be used to endorse or promote products derived from this
 software without specific prior written permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
 SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
 INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
 CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
 ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 POSSIBILITY OF SUCH DAMAGE.
 .
 If you modify this software, you should include a notice giving the
 name of the person performing the modification, the date of modification,
 and the reason for such modification.
 .
 Contact: Bruno Levy
 .
    levy@loria.fr
 .
    ALICE Project
    LORIA, INRIA Lorraine,
    Campus Scientifique, BP 239
    54506 VANDOEUVRE LES NANCY CEDEX
    FRANCE

Files: vtkVmtk/Utilities/Stellar_1.0/*
Copyright: 1995-1998, Jonathan Richard Shewchuk
 2006-2008, Bryan Klingner
License: BSD-3-clause
Comment:
 There is no license information in these files but the license is stated
 on the Stellar webpage: http://www.cs.berkeley.edu/~jrs/stellar/#about

Files: vtkVmtk/Utilities/tetgen1.4.3/tetgen.cxx
 vtkVmtk/Utilities/tetgen1.4.3/tetgen.h
Copyright: 2002-2009, Hang Si <si@wias-berlin.de>
License: Modified-MIT
 Permission is hereby granted, free  of charge, to any person obtaining
 a  copy  of this  software  and  associated  documentation files  (the
 "Software"), to  deal in  the Software without  restriction, including
 without limitation  the rights to  use, copy, modify,  merge, publish,
 distribute,  sublicense and/or  sell copies  of the  Software,  and to
 permit persons to whom the Software  is furnished to do so, subject to
 the following conditions:
 .
 Distribution of  modified  versions  of this code is permissible UNDER
 THE CONDITION THAT  THIS CODE AND ANY MODIFICATIONS  MADE TO IT IN THE
 SAME SOURCE FILES  tetgen.h AND tetgen.cxx  REMAIN UNDER  COPYRIGHT OF
 THE  ORIGINAL AUTHOR,  BOTH  SOURCE AND OBJECT  CODE  ARE MADE  FREELY
 AVAILABLE  WITHOUT   CHARGE,   AND  CLEAR   NOTICE  IS  GIVEN  OF  THE
 MODIFICATIONS.
 .
 Distribution of this code for  any  commercial purpose  is permissible
 ONLY BY DIRECT ARRANGEMENT WITH THE COPYRIGHT OWNER.
 .
 The  above  copyright  notice  and  this permission  notice  shall  be
 included in all copies or substantial portions of the Software.
 .
 THE  SOFTWARE IS  PROVIDED  "AS  IS", WITHOUT  WARRANTY  OF ANY  KIND,
 EXPRESS OR  IMPLIED, INCLUDING  BUT NOT LIMITED  TO THE  WARRANTIES OF
 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
 IN NO EVENT  SHALL THE AUTHORS OR COPYRIGHT HOLDERS  BE LIABLE FOR ANY
 CLAIM, DAMAGES OR  OTHER LIABILITY, WHETHER IN AN  ACTION OF CONTRACT,
 TORT  OR OTHERWISE, ARISING  FROM, OUT  OF OR  IN CONNECTION  WITH THE
 SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Files: vtkVmtk/Utilities/tetgen1.4.3/predicates.cxx
Copyright: 1996, Jonathan Richard Shewchuk
License: public-domain
 Routines for Arbitrary Precision Floating-point Arithmetic
 and Fast Robust Geometric Predicates
 (predicates.c)
 .
 May 18, 1996
 .
 Placed in the public domain by
 Jonathan Richard Shewchuk
 School of Computer Science
 Carnegie Mellon University
 5000 Forbes Avenue
 Pittsburgh, Pennsylvania  15213-3891
 jrs@cs.cmu.edu
 .
 This file contains C implementation of algorithms for exact addition
   and multiplication of floating-point numbers, and predicates for
   robustly performing the orientation and incircle tests used in
   computational geometry.  The algorithms and underlying theory are
   described in Jonathan Richard Shewchuk.  "Adaptive Precision Floating-
   Point Arithmetic and Fast Robust Geometric Predicates."  Technical
   Report CMU-CS-96-140, School of Computer Science, Carnegie Mellon
   University, Pittsburgh, Pennsylvania, May 1996.  (Submitted to
   Discrete & Computational Geometry.)
 .
 This file, the paper listed above, and other information are available
   from the Web page http://www.cs.cmu.edu/~quake/robust.html .

Files: debian/*
Copyright: 2008-2012, Johannes Ring <johannr@simula.no>
License: GPL-2+
 This program is free software; you can redistribute it
 and/or modify it under the terms of the GNU General Public
 License as published by the Free Software Foundation; either
 version 2 of the License, or (at your option) any later
 version.
 .
 This program is distributed in the hope that it will be
 useful, but WITHOUT ANY WARRANTY; without even the implied
 warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
 PURPOSE.  See the GNU General Public License for more
 details.
 .
 You should have received a copy of the GNU General Public
 License along with this package; if not, see <https://www.gnu.org/licenses/>.
 .
 On Debian systems, the full text of the GNU General Public
 License version 2 can be found in the file
 `/usr/share/common-licenses/GPL-2'.

License: The-Visualization-Toolkit-(VTK)-License
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
 .
     * Redistributions of source code must retain the above copyright notice,
       this list of conditions and the following disclaimer.
 .
     * Redistributions in binary form must reproduce the above copyright notice,
       this list of conditions and the following disclaimer in the documentation
       and/or other materials provided with the distribution.
 .
     * Neither name of Ken Martin, Will Schroeder, or Bill Lorensen nor the names
       of any contributors may be used to endorse or promote products derived from
       this software without specific prior written permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' AND
 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
 DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
 (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
 LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
 ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

License: BSD-3-clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are
 met:
 .
 1. Redistributions of source code must retain the above copyright
 notice, this list of conditions and the following disclaimer.
 .
 2. Redistributions in binary form must reproduce the above copyright
 notice, this list of conditions and the following disclaimer in the
 documentation and/or other materials provided with the distribution.
 .
 3. Neither the name of Orobix Srl, the Mario Negri Institute, of the
 University of Toronto, nor the names of its contributors may be used
 to endorse or promote products derived from this software without
 specific prior written permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
 OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.